Genemede
What is Genemede
Genemede aims to provide the means to build ontologies for general purpose data, in turn allowing the creation of a comprehensive ontology for describing neuroscience research projects, along with a set of tools to record, search and interact with data using standardized rules. Using a common ontology for data will allow communities to easily search and share information.
It is comprised of the following components:
The GAT
The GAT - Genemede Api and Tools - is a python project meant to be run locally. It will store data and allow for several operations, including search and export.
More in-depth information here.
The GUI
The GUI is a Web Application used to interact with the GAT APIs.
It is a vue.js application, and you can build it yourself or you can use our own public deployment here
More in-depth information here.
The HUB
(in development) The HUB is an online platform meant to facilitate the exchange of information such as ontologies.
More in-depth information here.
The Genemede Metatypes
(in development) This is a collection of officially curated metatypes by the Genemede project.
More in-depth information here.
What can Genemede do
- Create researchers, subjects, projects and labs;
- Edit relationships between created objects;
- Search data and view relationships;
- Export all data as a Genemede json file.
How to install Genemede
Installing the GAT
Download the repository via github git clone https://github.com/genemede/gnmd-gat and follow the instructions on the README file.
Installing and building the GUI
Download the repository via github git clone https://github.com/genemede/gnmd-gui and follow the instructions on the README file.